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PDBsum entry 4kpe

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Top Page protein dna_rna ligands metals Protein-protein interface(s) pores links
Pore analysis for: 4kpe calculated with MOLE 2.0 PDB id
4kpe
Pores calculated on whole structure Pores calculated excluding ligands

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22 pores, coloured by radius 24 pores, coloured by radius 24 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.56 1.57 29.8 -2.10 -0.71 17.0 87 3 4 5 1 1 0 0  
2 1.83 2.23 30.2 -1.97 -0.61 15.4 86 5 2 6 2 1 1 0  DC 4 F
3 1.57 1.57 30.8 -2.03 -0.65 24.7 85 5 3 1 1 0 1 0  DC 4 F
4 1.59 1.79 46.0 -1.60 -0.52 19.3 87 3 4 4 2 1 0 0  DC 9 E DA 10 E DC 4 F DT 10 F DG 11 F
5 1.45 1.45 49.3 -1.63 -0.48 21.3 71 3 5 0 1 3 1 0  MG 701 D DA 1 F DG 2 F DT 3 F DC 4 F DT 15 G DT 4
H DA 5 H AF5 101 H
6 1.48 1.48 57.9 -1.58 -0.51 18.8 77 3 4 2 0 4 1 0  MG 502 A MG 701 C DT 11 E DT 15 E DT 3 F DC 4 F D
A 5 F AF5 101 F DG 1 H
7 1.67 1.69 60.7 -1.46 -0.73 16.6 89 3 5 2 2 0 0 0  DC 9 G DG 10 G DT 11 G DC 3 H DT 4 H DA 5 H DT 6
H DG 7 H DC 10 H DG 11 H
8 1.84 2.22 61.0 -1.61 -0.71 13.2 89 4 4 6 3 1 0 0  DC 9 E DA 10 E DT 11 E DT 3 F DC 4 F DA 5 F DT 6
F DT 7 F DT 10 F DG 11 F
9 1.57 1.57 61.6 -1.57 -0.74 17.9 87 4 5 1 2 0 1 0  DC 9 E DA 10 E DT 11 E DT 3 F DC 4 F DA 5 F DT 6
F DT 7 F DT 10 F DG 11 F
10 1.82 1.82 63.9 -1.56 -0.22 22.2 80 6 6 1 3 4 1 0  
11 2.84 3.05 64.8 -1.35 -0.75 15.3 88 0 5 3 3 0 3 0  DT 11 E DA 1 F DG 2 F DT 3 F DC 4 F DC 9 G DG 10
G DT 11 G DG 12 G DG 1 H DA 2 H DC 3 H DT 4 H DA
5 H DT 6 H DG 7 H DC 10 H DG 11 H
12 1.69 1.71 73.7 -1.78 -0.73 19.7 88 3 7 5 3 0 3 0  DT 11 E DA 1 F DG 2 F DT 3 F DC 4 F DG 1 H DA 2 H
DC 3 H DT 4 H
13 1.45 1.45 76.7 -1.48 -0.55 19.8 76 2 6 1 2 3 1 0  MG 502 B MG 701 D DA 1 F DC 9 G DG 10 G DT 11 G
DG 12 G DA 14 G DT 15 G DT 4 H DA 5 H DT 6 H DG 7
H DC 10 H DG 11 H AF5 101 H
14 1.68 1.70 77.1 -1.80 -0.64 20.8 88 6 7 4 3 0 0 0  DC 9 G DG 10 G DC 3 H DT 4 H DC 10 H DG 11 H
15 1.80 1.98 77.7 -1.26 -0.64 15.2 89 3 6 3 3 0 0 0  DC 9 G DG 10 G DT 11 G DT 4 H DA 5 H DT 6 H DG 7
H DC 10 H DG 11 H
16 1.66 1.69 82.5 -1.75 -0.71 20.9 84 7 6 2 2 0 1 0  DC 9 E DC 4 F DA 5 F DT 6 F DT 7 F DT 10 F DG 11
F DC 3 H DT 4 H
17 1.50 1.50 91.5 -1.38 -0.55 17.8 80 4 8 2 2 4 2 0  MG 701 C DT 15 E AF5 101 F DC 9 G DG 10 G DT 11 G
DG 12 G DG 1 H DA 2 H DC 3 H DT 4 H DA 5 H DT 6 H
DG 7 H DC 10 H DG 11 H
18 1.51 1.51 92.2 -1.77 -0.56 20.7 78 8 7 2 1 4 2 0  MG 701 C DT 15 E DC 4 F DA 5 F AF5 101 F DG 1 H
DC 3 H DT 4 H
19 1.49 1.60 94.0 -1.83 -0.62 22.3 80 5 8 3 2 3 1 0  MG 502 B MG 701 D DA 1 F DT 11 G DG 12 G DA 14 G
DT 15 G DC 3 H DT 4 H DA 5 H AF5 101 H
20 1.88 2.05 95.7 -1.60 -0.66 18.1 88 3 8 6 4 0 3 0  DT 11 E DA 1 F DG 2 F DT 3 F DC 4 F DC 9 G DG 10
G DT 11 G DG 1 H DA 2 H DC 3 H DT 4 H DC 10 H DG
11 H
21 1.43 1.43 112.0 -1.64 -0.55 20.2 81 5 9 4 3 3 1 0  MG 502 B MG 701 D DA 1 F DC 9 G DG 10 G DT 11 G
DG 12 G DA 14 G DT 15 G DC 3 H DT 4 H DA 5 H DC
10 H DG 11 H AF5 101 H
22 1.46 1.46 115.2 -1.62 -0.55 19.4 83 6 10 5 3 4 2 0  MG 701 C DT 15 E AF5 101 F DC 9 G DG 10 G DT 11 G
DG 1 H DA 2 H DC 3 H DT 4 H DC 10 H DG 11 H
23 1.66 1.87 115.2 -1.95 -0.57 24.8 84 12 10 6 4 3 0 0  
24 1.14 2.54 29.5 1.97 0.70 8.1 77 2 0 1 13 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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