PDBsum entry 4kkd

Tunnel analysis for: 4kkd calculated with

MOLE 2.0

PDB id

4kkd

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
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visualization
with HETATM:

without HETATM:

9 tunnels, coloured by tunnel radius

9 tunnels, coloured by tunnel radius

9 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.43

1.64

22.8

0.95

0.10

4.3

76

1

0

1

5

1

0

1

2

1.44

1.66

26.3

0.58

-0.04

6.4

75

0

1

2

5

1

1

1

3

1.44

1.65

28.6

1.04

0.17

5.0

75

1

1

1

5

1

0

2

4

1.24

1.34

15.6

-0.35

0.16

8.1

67

1

0

0

2

1

3

0

5

1.52

3.62

15.0

0.72

0.71

1.6

60

0

0

1

3

3

1

0

6

1.25

1.25

18.9

-0.67

-0.18

13.7

62

2

0

0

2

1

1

0

7

1.17

2.03

15.9

0.16

0.15

13.9

72

1

1

0

3

1

1

2

8

1.19

2.10

15.3

2.03

0.75

3.4

77

1

0

0

5

1

1

0

9

1.34

1.41

15.2

-2.34

-0.77

19.5

76

2

2

2

1

0

2

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.