 |
PDBsum entry 4jv1
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 4jv1 calculated with  MOLE 2.0
|
PDB id
|
|
|
|
4jv1
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
5 pores,
coloured by radius |
|
4 pores,
coloured by radius
|
4 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
2.34 |
2.39 |
37.0 |
-1.85 |
-0.46 |
23.3 |
87 |
|
6 |
4 |
4 |
2 |
1 |
0 |
0 |
|
DGT 401 A CA 403 A CA 404 A HN1 605 B DG 606 B DA
607 B DC 513 C
|
 |
|
2 |
 |
2.24 |
2.24 |
38.8 |
-0.60 |
0.13 |
23.2 |
93 |
6 |
0 |
2 |
5 |
0 |
0 |
0 |
DC 604 B HN1 605 B DG 606 B DA 607 B DA 608 B DT
609 B DC 610 B DG 505 C DG 509 C DA 510 C DT 511 C
|
|
3 |
 |
2.47 |
2.60 |
40.8 |
-0.50 |
0.18 |
22.4 |
94 |
5 |
0 |
3 |
3 |
0 |
0 |
0 |
DC 604 B HN1 605 B DG 606 B DA 607 B DA 608 B DT
609 B DC 610 B DG 505 C DG 509 C DA 510 C DT 511
C DT 512 C DC 513 C
|
 |
4 |
 |
2.30 |
2.30 |
42.8 |
-2.00 |
-0.58 |
19.7 |
82 |
5 |
2 |
4 |
0 |
2 |
0 |
0 |
DG 606 B DA 607 B DA 608 B DT 609 B DC 610 B DT
512 C DC 513 C
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program