PDBsum entry 4jtd Go to PDB code:  Pore analysis for: 4jtd calculated with MOLE 2.0 PDB id 4jtd Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 pores, coloured by radius 10 pores, coloured by radius 10 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.19 1.54 38.2 -0.20 -0.05 16.1 70 2 1 2 4 2 0 1   2 1.98 4.56 53.4 -0.60 0.11 7.6 69 4 1 3 5 6 0 0  NAP 1001 A 3 1.89 3.24 26.6 -0.81 -0.14 7.5 69 3 1 3 1 3 2 0  NAP 1001 G 4 1.99 3.23 29.4 -0.52 0.26 7.3 64 3 0 3 2 6 0 0  NAP 1001 G 5 1.93 5.04 39.7 -1.29 0.02 12.8 71 5 2 5 1 4 0 0  NAP 1001 G 6 1.13 2.49 25.8 1.68 0.51 2.2 79 1 0 2 5 4 0 0   7 1.28 1.28 31.5 -0.44 -0.19 10.8 75 3 1 1 6 4 1 0   8 1.33 1.33 38.3 -0.20 -0.12 9.7 83 4 1 3 7 3 1 0   9 1.69 1.91 59.6 -1.49 -0.57 14.6 85 4 3 7 1 3 0 0  PGW 518 B 10 1.82 1.82 28.9 -2.21 -0.69 30.7 81 2 3 0 1 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.