PDBsum entry 4jtd Go to PDB code:  Tunnel analysis for: 4jtd calculated with MOLE 2.0 PDB id 4jtd Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.36 1.36 27.8 -0.47 0.31 7.5 56 2 1 0 3 5 0 0  NAP 1001 G 2 1.35 1.34 28.9 0.01 0.39 4.2 58 1 0 1 4 7 0 0  NAP 1001 G 3 1.34 1.34 29.8 -0.15 -0.26 5.7 75 2 1 4 3 2 1 0  NAP 1001 G 4 1.34 1.34 16.5 -0.04 -0.15 8.2 81 2 0 0 5 1 1 0   5 1.33 1.81 22.9 -0.48 -0.01 10.8 78 3 1 1 5 3 1 0   6 1.45 1.70 26.9 -0.46 -0.04 11.1 83 4 1 3 4 3 1 0   7 1.46 1.69 32.9 -0.59 -0.01 10.2 78 4 1 2 4 4 1 0   8 1.17 1.16 16.6 -1.03 -0.60 10.9 84 0 2 2 1 2 0 0   9 1.29 3.09 29.4 -2.44 -0.31 28.9 81 5 3 2 2 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.