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PDBsum entry 4jt0

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Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 4jt0 calculated with MOLE 2.0 PDB id
4jt0
Pores calculated on whole structure Pores calculated excluding ligands

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30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.30 1.58 27.1 -2.18 -0.23 25.5 76 2 5 2 1 4 1 0  
2 1.40 1.58 93.3 -2.71 -0.48 29.9 82 11 5 8 3 6 0 0  
3 1.52 1.96 96.9 -1.81 -0.31 22.3 80 11 8 7 7 7 1 0  
4 1.61 1.84 97.2 -1.94 -0.36 23.7 79 10 7 7 7 9 0 0  
5 1.39 2.01 100.8 -1.93 -0.33 22.6 81 14 5 8 5 6 1 1  
6 1.39 1.43 104.8 -2.06 -0.39 22.7 82 11 10 10 10 5 0 0  
7 1.73 1.86 115.0 -2.06 -0.38 27.8 81 12 13 5 6 4 1 0  
8 1.40 1.61 122.5 -2.34 -0.52 24.6 83 11 6 6 2 4 1 0  
9 2.05 2.08 123.9 -1.78 -0.26 23.5 74 12 7 5 8 9 3 0  
10 1.10 1.50 134.7 -1.16 -0.29 15.2 82 10 10 14 10 9 4 0  TY5 1 c 0L1 101 c
11 1.12 1.43 159.7 -2.11 -0.47 22.8 85 14 11 15 6 5 2 0  TY5 1 c 0L1 101 c
12 1.12 1.50 168.9 -1.69 -0.39 19.6 83 15 12 15 10 6 3 1  TY5 1 c 0L1 101 c
13 1.07 1.64 171.4 -1.98 -0.45 22.7 83 15 13 14 8 7 3 0  TY5 1 c 0L1 101 c
14 1.40 1.61 168.4 -2.77 -0.47 26.6 85 17 4 14 1 6 0 0  
15 1.11 1.68 172.6 -2.10 -0.48 21.6 86 15 10 16 5 5 2 0  TY5 1 c 0L1 101 c
16 1.11 1.73 179.3 -1.77 -0.44 18.0 84 15 12 16 10 6 3 0  TY5 1 c 0L1 101 c
17 1.38 1.61 175.1 -2.23 -0.42 21.1 84 17 6 14 6 7 1 0  
18 1.24 1.29 179.0 -2.03 -0.48 21.5 83 13 12 15 9 8 2 0  TY5 1 c 0L1 101 c
19 1.39 1.66 179.1 -2.62 -0.47 25.7 84 16 6 15 5 9 0 0  
20 1.28 1.34 187.2 -2.11 -0.43 23.4 81 15 13 14 9 10 2 0  ACA 3 d TY5 4 d
21 1.12 1.42 192.7 -1.77 -0.49 19.2 83 15 17 16 10 6 4 0  TY5 1 c 0L1 101 c ACA 3 d TY5 4 d
22 1.76 1.99 190.8 -2.41 -0.45 25.5 82 17 9 14 7 11 1 0  
23 1.58 2.88 188.3 -2.13 -0.38 22.3 82 17 8 15 9 10 1 1  
24 1.39 1.66 190.6 -2.06 -0.31 22.5 79 17 6 11 6 9 3 0  
25 1.18 1.61 194.8 -1.61 -0.35 19.2 81 15 13 13 11 7 5 0  TY5 1 c 0L1 101 c
26 1.09 1.75 201.0 -1.84 -0.46 20.3 83 12 13 13 7 6 3 0  TY5 1 c 0L1 101 c
27 1.40 1.66 193.1 -2.20 -0.41 23.6 83 20 6 13 6 8 0 0  
28 1.37 1.62 204.0 -2.41 -0.45 24.6 85 19 10 17 9 6 0 0  
29 1.03 1.72 208.1 -2.05 -0.48 21.9 85 18 16 19 14 5 2 0  TY5 1 c 0L1 101 c
30 1.44 1.54 220.4 -2.29 -0.46 22.9 82 14 9 13 6 10 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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