spacer
spacer

PDBsum entry 4jsv

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 4jsv calculated with MOLE 2.0 PDB id
4jsv
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
19 pores, coloured by radius 20 pores, coloured by radius 20 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.37 2.12 29.2 -1.46 -0.31 12.0 82 4 2 7 3 1 1 0  
2 2.63 4.32 41.7 -1.03 -0.22 21.5 83 4 7 3 5 1 2 0  
3 2.19 4.56 44.9 -1.82 -0.08 32.6 82 8 7 2 4 1 0 0  
4 2.50 4.10 46.0 -0.92 -0.12 20.2 81 7 7 3 5 2 2 0  
5 1.92 4.37 54.5 -2.43 -0.35 32.4 80 11 7 3 3 1 2 0  
6 1.85 1.99 63.2 -1.32 -0.34 17.9 83 5 6 2 7 1 8 0  
7 2.96 3.73 66.0 -1.90 -0.29 20.5 86 7 9 6 7 1 1 0  ADP 2601 B MG 2602 B MG 2603 B MGF 2604 B
8 2.60 3.92 67.0 -1.45 -0.27 14.1 84 8 6 4 5 1 3 0  
9 1.87 1.97 69.6 -1.38 -0.34 17.2 80 5 6 2 10 4 8 0  
10 1.87 1.99 71.8 -0.81 -0.24 15.3 87 8 4 6 11 2 7 0  
11 1.86 2.23 78.0 -2.43 -0.52 20.0 84 11 3 10 5 1 1 0  
12 2.11 2.27 98.1 -1.50 -0.12 24.6 78 14 13 5 9 5 4 0  
13 1.89 2.00 98.3 -1.29 -0.30 17.5 86 8 7 7 11 3 7 0  ADP 2601 B MG 2602 B MG 2603 B MGF 2604 B
14 1.59 1.89 101.1 -1.83 -0.44 19.1 81 9 7 11 6 4 5 1  ADP 2601 B MG 2602 B MGF 2604 B
15 1.45 1.45 101.7 -1.20 -0.38 18.1 77 12 9 8 11 6 7 0  
16 1.71 1.76 116.9 -1.25 -0.38 14.7 81 11 7 14 14 6 4 1  
17 1.51 1.54 114.3 -1.41 -0.54 20.0 77 13 11 7 10 5 9 0  
18 1.40 1.50 129.6 -1.51 -0.29 17.5 81 17 9 13 11 8 2 0  ADP 2601 B MG 2602 B MGF 2604 B
19 1.51 1.84 171.0 -1.40 -0.36 19.6 82 17 14 11 18 7 11 0  
20 1.42 1.49 177.2 -1.67 -0.34 19.2 80 15 19 8 14 7 8 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer