 |
PDBsum entry 4jre
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 4jre calculated with  MOLE 2.0
|
PDB id
|
|
|
|
4jre
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
12 tunnels,
coloured by tunnel radius |
|
9 tunnels,
coloured by
tunnel radius
|
9 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.49 |
1.79 |
20.0 |
-0.16 |
-0.49 |
2.7 |
89 |
|
1 |
0 |
2 |
4 |
0 |
2 |
0 |
|
|
 |
|
2 |
 |
1.41 |
2.03 |
35.3 |
-1.41 |
-0.61 |
13.3 |
86 |
3 |
3 |
3 |
1 |
1 |
2 |
0 |
|
|
3 |
 |
1.45 |
1.52 |
15.9 |
-2.16 |
-0.27 |
16.5 |
70 |
2 |
1 |
3 |
0 |
4 |
0 |
0 |
|
|
4 |
 |
1.34 |
1.63 |
15.9 |
-1.82 |
-0.12 |
13.7 |
69 |
2 |
0 |
3 |
0 |
4 |
0 |
0 |
|
|
5 |
 |
1.28 |
2.55 |
15.3 |
-0.09 |
-0.49 |
2.5 |
98 |
1 |
0 |
4 |
1 |
0 |
0 |
0 |
|
|
6 |
 |
1.29 |
2.53 |
17.5 |
-0.68 |
-0.61 |
5.9 |
99 |
1 |
0 |
5 |
1 |
0 |
0 |
0 |
|
|
7 |
 |
1.27 |
2.54 |
16.7 |
-0.16 |
-0.49 |
3.1 |
93 |
1 |
0 |
4 |
1 |
1 |
0 |
0 |
|
|
8 |
 |
1.26 |
2.54 |
17.1 |
-0.48 |
-0.59 |
5.1 |
95 |
1 |
0 |
5 |
1 |
1 |
0 |
0 |
|
 |
9 |
 |
1.22 |
1.95 |
18.6 |
0.75 |
0.03 |
1.6 |
84 |
0 |
0 |
2 |
7 |
1 |
0 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program