PDBsum entry 4jot Go to PDB code:  Tunnel analysis for: 4jot calculated with MOLE 2.0 PDB id 4jot Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 tunnel, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.14 1.40 20.2 0.68 -0.10 3.1 83 1 1 4 4 2 0 0  MSE 36 A 2 1.28 2.03 26.1 0.54 0.32 3.6 75 0 1 3 8 3 1 0  MSE 36 A MSE 95 A 3 1.25 2.02 32.2 1.18 0.37 6.5 74 0 2 1 10 3 1 0  MSE 36 A MSE 95 A 4 1.24 2.06 33.1 1.76 0.62 3.5 75 0 1 1 11 4 0 0  MSE 36 A MSE 95 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.