PDBsum entry 4jma

Tunnel analysis for: 4jma calculated with

MOLE 2.0

PDB id

4jma

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

4 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.40

1.40

26.2

-0.77

-0.57

10.2

87

2

1

3

2

1

1

0

HEM 301 A 3FA 302 A

2

1.41

1.41

32.2

-1.23

-0.48

13.0

87

4

1

3

1

1

1

0

HEM 301 A 3FA 302 A

3

1.21

1.21

18.3

-0.39

-0.33

7.2

88

1

1

1

1

2

0

0

4

1.21

1.53

23.8

-0.22

-0.50

6.1

87

2

2

0

2

1

1

0

5

1.35

1.45

18.8

-0.11

-0.08

15.1

79

1

1

2

3

2

0

0

3FA 303 A

6

1.54

1.54

15.5

0.24

-0.14

5.8

76

1

1

1

3

2

2

1

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.