PDBsum entry 4jdb Go to PDB code:  Tunnel analysis for: 4jdb calculated with MOLE 2.0 PDB id 4jdb Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   0 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.44 1.44 25.5 -0.17 -0.43 3.4 88 0 1 3 4 1 0 1  GOL 403 A FMN 412 A 2 1.43 1.43 28.7 -0.41 -0.46 6.0 89 1 2 4 4 1 0 1  GOL 403 A FMN 412 A 3 1.42 1.42 32.2 -1.20 -0.60 6.4 89 3 0 7 3 0 2 1  JDB 401 A FMN 412 A 4 1.71 1.71 26.6 -0.66 -0.36 6.5 88 1 2 5 3 2 0 1  GOL 403 B FMN 406 B 5 1.71 1.71 29.6 -1.17 -0.56 7.1 86 3 0 6 3 1 1 1  JDB 401 B FMN 406 B 6 1.30 2.31 15.7 0.88 0.51 6.2 70 0 2 0 4 2 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.