PDBsum entry 4jd2 Go to PDB code:  Pore analysis for: 4jd2 calculated with MOLE 2.0 PDB id 4jd2 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   12 pores, coloured by radius 13 pores, coloured by radius 13 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.70 3.47 42.2 -1.54 -0.15 19.4 80 7 4 4 3 1 3 0   2 1.84 2.15 46.3 -2.38 -0.53 22.9 85 10 4 4 1 0 1 0   3 1.25 3.42 47.2 -2.20 -0.62 20.5 83 5 5 9 1 1 2 1   4 1.28 1.28 49.7 -1.25 -0.35 16.1 82 5 4 5 4 2 1 0   5 1.25 1.26 59.1 -1.71 -0.63 14.3 84 5 6 11 2 2 1 1   6 1.74 2.91 66.6 -1.40 -0.26 22.4 82 7 5 2 10 2 0 0   7 2.27 2.64 71.9 -1.76 -0.35 24.0 76 7 5 1 4 2 2 0  PG4 201 F 8 1.75 2.93 79.6 -2.00 -0.41 28.0 85 8 8 6 3 1 0 0   9 1.93 1.93 81.1 -1.17 -0.16 19.4 83 8 6 5 6 3 0 0   10 1.81 1.85 101.2 -2.27 -0.47 28.0 83 13 9 7 5 1 1 0  PG4 503 B PG4 201 F 11 1.79 1.85 131.5 -2.58 -0.49 30.4 80 15 11 6 3 3 2 0  PG4 503 B PG4 201 F 12 1.39 1.49 142.8 -1.33 -0.08 24.1 80 13 12 2 10 5 1 0   13 1.17 1.41 157.3 -1.98 -0.47 25.5 79 12 11 8 4 3 3 2  PG4 201 F Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.