PDBsum entry 4jd2 Go to PDB code:  Tunnel analysis for: 4jd2 calculated with MOLE 2.0 PDB id 4jd2 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.19 1.56 29.9 -0.12 0.28 14.4 86 5 1 2 7 1 0 0   2 1.18 1.57 31.3 0.39 0.42 11.8 89 4 1 2 7 1 0 0   3 1.60 2.52 18.2 -1.63 0.02 17.1 76 1 1 2 1 3 0 0   4 1.86 1.99 31.0 -1.57 -0.22 19.5 79 2 2 3 2 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.