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PDBsum entry 4jam

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Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 4jam calculated with MOLE 2.0 PDB id
4jam
Pores calculated on whole structure Pores calculated excluding ligands

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7 pores, coloured by radius 9 pores, coloured by radius 9 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.94 2.95 25.3 -1.20 -0.53 7.7 81 1 2 2 2 0 4 0  
2 3.44 3.85 26.2 -0.55 -0.61 6.2 96 1 2 0 2 0 1 0  
3 1.17 1.49 27.1 -0.45 -0.59 4.9 98 1 0 5 3 0 0 0  SO4 306 B
4 2.97 3.23 33.8 -1.40 -0.57 15.6 93 4 0 2 2 0 1 0  SO4 301 L
5 3.10 3.46 34.3 -2.19 -0.68 21.0 88 4 1 2 0 0 1 0  SO4 306 B
6 1.27 1.27 35.7 -0.86 -0.48 12.3 89 4 0 3 4 0 1 0  SO4 301 L
7 1.19 1.49 37.2 -1.24 -0.62 14.1 91 4 1 5 2 0 1 0  SO4 306 B
8 1.17 1.49 38.5 -0.83 -0.62 9.3 93 2 2 5 3 0 1 0  SO4 306 B
9 2.96 3.32 43.8 -1.57 -0.60 17.3 97 4 0 2 2 0 0 0  SO4 301 L

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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