PDBsum entry 4ja9 Go to PDB code:  Tunnel analysis for: 4ja9 calculated with MOLE 2.0 PDB id 4ja9 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.33 3.29 17.2 0.98 0.48 14.8 71 2 1 0 5 1 1 0   2 1.34 1.63 29.4 -1.66 -0.21 25.4 80 4 5 1 3 4 0 0  MG 501 A MG 502 A 3 1.34 1.62 31.4 -2.33 -0.47 29.7 78 6 6 1 2 4 0 0  MG 501 A MG 502 A 4 1.21 1.90 21.5 -0.55 -0.06 11.9 75 2 1 1 4 1 1 0   5 1.21 1.87 22.8 -1.45 -0.30 10.0 76 2 2 2 2 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.