PDBsum entry 4j96 Go to PDB code:  Tunnel analysis for: 4j96 calculated with MOLE 2.0 PDB id 4j96 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.56 3.35 18.7 0.16 -0.06 13.6 89 1 2 1 7 0 0 0   2 1.19 1.22 17.8 0.20 0.10 9.1 83 1 1 1 5 1 0 0   3 1.32 1.32 15.1 -0.52 -0.66 11.2 69 0 3 0 2 0 0 0   4 1.31 1.31 20.2 1.27 0.26 6.2 72 0 1 1 5 2 0 0   5 1.32 1.32 20.3 -0.68 -0.49 13.7 66 2 3 0 2 1 0 0   6 1.20 2.77 15.3 -0.03 0.11 8.0 77 1 1 3 6 1 0 1   7 1.22 1.71 17.0 -0.68 -0.04 17.7 77 1 3 0 4 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.