PDBsum entry 4j86

Tunnel analysis for: 4j86 calculated with

MOLE 2.0

PDB id

4j86

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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9 tunnels, coloured by tunnel radius

9 tunnels, coloured by tunnel radius

9 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.27

1.43

24.1

-1.18

-0.01

14.2

72

4

1

2

2

4

0

1

2

1.74

1.96

26.9

-2.11

-0.14

21.8

78

6

1

3

1

2

1

0

3

1.32

1.53

27.4

-1.36

-0.18

14.5

80

5

1

3

3

3

0

0

4

1.73

2.07

28.3

-1.87

-0.04

23.4

75

5

2

3

2

3

1

0

5

1.33

1.52

34.1

-1.35

-0.36

13.5

76

2

1

1

3

2

4

0

6

2.07

2.08

34.8

-1.46

-0.40

14.5

78

4

2

1

1

1

3

1

7

1.33

1.52

35.5

-1.17

-0.41

12.8

80

2

2

1

4

1

4

0

8

1.19

1.47

37.6

-1.04

-0.21

10.5

72

2

1

1

3

3

4

1

9

1.19

1.47

39.0

-0.95

-0.27

10.0

76

2

2

1

4

2

4

1

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.