PDBsum entry 4j84

Tunnel analysis for: 4j84 calculated with

MOLE 2.0

PDB id

4j84

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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without HETATM:

6 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.26

1.27

27.7

-1.19

-0.35

16.8

80

3

2

2

3

2

0

0

2

1.25

1.40

29.7

-1.27

-0.37

16.0

79

1

2

1

3

1

3

1

3

1.17

1.98

26.6

-1.92

-0.70

19.9

81

2

5

6

2

3

0

0

4

1.25

1.87

30.0

-2.10

-0.77

21.3

85

3

5

7

1

2

0

0

5

1.18

1.26

19.6

-0.90

-0.23

14.4

85

1

2

1

4

1

1

1

6

1.19

1.26

27.1

-1.06

-0.28

15.7

80

3

2

2

3

2

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.