PDBsum entry 4j2d Go to PDB code:  Pore analysis for: 4j2d calculated with MOLE 2.0 PDB id 4j2d Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 pores, coloured by radius 9 pores, coloured by radius 9 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.94 2.06 35.4 -1.76 -0.48 20.6 80 3 3 1 2 1 0 0  DC 111 P DT 112 P DT 113 P DT 1 T DG 5 T DT 6 T 2 1.49 1.61 36.4 -1.21 -0.57 11.2 85 5 0 3 0 1 1 0  DG 103 P DC 104 P DT 109 P DG 110 P DC 111 P DT 112 P DA 11 T DG 12 T DT 13 T 3 2.82 2.85 39.3 -0.12 0.03 10.8 84 4 0 3 5 2 0 0  DC 111 P DT 112 P DT 113 P DA 114 P DT 115 P DT 1 T DG 5 T DT 6 T 4 1.84 1.84 50.5 -1.55 -0.14 27.9 80 12 4 4 6 2 0 0  TTP 1001 A CA 1005 A CA 1009 A 5 1.83 1.84 54.6 -1.50 -0.34 26.3 81 6 4 1 6 1 0 0  TTP 1001 A CA 1005 A CA 1009 A DC 111 P DT 112 P DT 113 P DA 114 P DT 115 P DT 1 T DG 5 T DT 6 T 6 1.26 1.48 56.4 -1.03 -0.67 9.5 85 4 2 4 0 1 3 0  DG 105 P DG 106 P DT 109 P DG 110 P DC 111 P DT 112 P DC 10 T DA 11 T DG 12 T 7 2.70 4.30 68.4 -1.86 -0.42 24.4 84 6 6 6 2 3 1 0   8 1.87 1.86 78.6 -2.14 -0.42 29.5 81 11 8 2 6 2 0 0  TTP 1001 A CA 1005 A CA 1009 A DT 113 P DA 114 P DT 115 P DT 1 T 9 0.96 2.36 41.5 0.03 0.22 13.5 76 5 2 1 7 3 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.