PDBsum entry 4j2a Go to PDB code:  Pore analysis for: 4j2a calculated with MOLE 2.0 PDB id 4j2a Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.69 4.25 36.1 -0.49 -0.22 12.2 85 1 5 3 2 2 1 0   2 1.97 2.10 38.5 -0.79 -0.52 15.3 84 2 3 0 3 0 0 0  DT 112 P DT 113 P DT 1 T DG 3 T DG 5 T DT 6 T 3 2.84 3.05 39.9 0.19 0.01 9.1 81 3 1 2 5 2 0 0  DT 112 P DT 113 P DA 114 P DT 1 T DG 3 T DA 4 T DG 5 T DT 6 T 4 1.94 2.04 48.5 -1.32 -0.13 24.6 79 7 5 3 6 3 0 0  TTP 1001 A CA 1005 A 5 1.96 2.03 51.0 -0.96 -0.22 21.7 81 5 4 0 6 1 0 0  TTP 1001 A CA 1005 A DT 112 P DT 113 P DA 114 P DC 115 P DT 1 T DG 3 T DA 4 T DG 5 T DT 6 T 6 1.46 1.55 58.6 -0.73 -0.43 9.0 87 5 0 3 2 1 1 0  DG 103 P DT 109 P DG 110 P DC 111 P DT 112 P DG 5 T DT 6 T DA 11 T DG 12 T 7 1.94 2.01 66.2 -1.49 -0.32 24.7 80 8 7 1 6 2 0 0  TTP 1001 A CA 1005 A DT 113 P DA 114 P DC 115 P DT 1 T Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.