 |
PDBsum entry 4j0m
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 4j0m calculated with  MOLE 2.0
|
PDB id
|
|
|
|
4j0m
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
3 pores,
coloured by radius |
|
3 pores,
coloured by radius
|
3 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
2.65 |
2.87 |
25.3 |
-0.69 |
-0.22 |
15.7 |
90 |
|
1 |
3 |
5 |
2 |
2 |
0 |
0 |
|
BLD 804 A
|
 |
|
2 |
 |
1.44 |
1.44 |
32.9 |
-1.03 |
-0.30 |
8.7 |
93 |
2 |
1 |
8 |
3 |
2 |
0 |
0 |
BLD 804 A NAG 2 C
|
 |
3 |
 |
1.40 |
1.39 |
44.7 |
0.17 |
-0.08 |
5.8 |
87 |
2 |
2 |
6 |
6 |
2 |
1 |
0 |
BLD 804 A
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program