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PDBsum entry 4ioo

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DNA binding protein PDB id
4ioo
Contents
Protein chain
126 a.a.
Ligands
EDO ×5
BAE
DMS
Waters ×172

References listed in PDB file
Key reference
Title Different orientations of low-Molecular-Weight fragments in the binding pocket of a brd4 bromodomain.
Authors G.Lolli, R.Battistutta.
Ref. Acta Crystallogr D Biol Crystallogr, 2013, 69, 2161-2164. [DOI no: 10.1107/S090744491301994X]
PubMed id 24100334
Abstract
Bromodomains are involved in the regulation of chromatin architecture and transcription through the recognition of acetylated lysines in histones and other proteins. Many of them are considered to be relevant pharmacological targets for different pathologies. Three crystallographic structures of the N-terminal bromodomain of BRD4 in complex with low-molecular-weight fragments are presented. They show that similar molecules mimicking acetylated lysine bind the bromodomain with different orientations and exploit different interactions. It is also advised to avoid DMSO when searching for low-affinity fragments that interact with bromodomains since DMSO binds in the acetylated lysine-recognition pocket of BRD4.
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