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PDBsum entry 4imy

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Pore analysis for: 4imy calculated with MOLE 2.0 PDB id
4imy
Pores calculated on whole structure Pores calculated excluding ligands

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21 pores, coloured by radius 19 pores, coloured by radius 19 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.93 2.10 37.7 -2.29 -0.56 26.0 79 4 4 4 3 0 1 0  TPO 186 C
2 2.41 2.65 38.6 -1.44 -0.41 19.5 77 2 6 5 3 1 1 0  
3 2.65 2.73 57.4 -2.01 -0.56 21.3 85 6 6 8 3 1 1 0  
4 3.63 3.74 60.1 -2.49 -0.46 27.8 81 10 4 6 6 1 1 0  TPO 186 A TPO 186 C
5 2.58 2.67 63.9 -2.65 -0.48 28.5 81 8 5 6 5 1 1 0  TPO 186 A TPO 186 C
6 3.61 3.72 70.8 -2.11 -0.43 26.0 79 11 6 8 6 1 1 0  TPO 186 A
7 1.77 1.76 73.6 -1.83 -0.39 16.6 82 6 2 8 5 2 1 0  TPO 186 C
8 1.11 1.11 78.8 -0.87 -0.39 15.3 89 3 0 1 3 0 0 0  
9 3.17 3.55 87.5 -1.99 -0.21 25.5 81 11 4 6 8 1 2 0  TPO 186 C
10 1.85 1.82 94.7 -1.95 -0.47 19.9 83 7 4 11 4 2 2 0  TPO 186 C
11 1.98 2.14 97.6 -2.34 -0.39 28.6 79 12 6 8 4 1 3 0  TPO 186 C
12 3.09 3.54 104.2 -2.35 -0.32 31.0 82 14 6 9 7 2 2 0  TPO 186 A
13 3.13 3.56 113.3 -2.33 -0.27 31.2 80 14 6 8 8 1 2 0  TPO 186 A
14 1.83 1.82 119.5 -1.68 -0.30 15.4 81 7 3 12 4 3 1 0  
15 3.11 3.56 121.4 -1.73 -0.33 20.3 80 14 4 6 5 2 2 0  TPO 186 C TPO 186 E
16 1.10 1.10 140.0 -0.78 -0.36 18.2 84 4 7 4 10 0 0 0  AMP 401 A
17 1.72 1.73 160.3 -1.41 -0.34 12.9 81 10 3 12 3 4 1 0  TPO 186 E
18 2.95 3.16 173.5 -1.99 -0.36 25.6 81 19 8 11 8 2 2 0  TPO 186 A TPO 186 E
19 1.17 1.51 191.2 -1.35 -0.26 22.6 83 21 12 10 13 3 2 1  TPO 186 A AMP 401 A TPO 186 E

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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