PDBsum entry 4i0s

Tunnel analysis for: 4i0s calculated with

MOLE 2.0

PDB id

4i0s

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

0 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.36

1.49

17.7

-0.27

-0.21

12.8

79

3

2

1

4

1

1

0

1B5 701 A

2

1.27

1.55

19.2

0.24

-0.12

8.5

81

3

1

1

5

1

1

0

1B5 701 A

3

1.25

1.62

19.6

0.59

0.02

11.3

84

2

1

1

6

1

0

0

1B5 701 A

4

1.31

2.12

22.4

1.78

0.38

1.2

81

0

0

2

7

1

1

0

1B5 701 A

5

1.28

1.54

22.5

0.23

-0.07

13.5

83

3

2

1

7

1

0

0

1B5 701 A

6

1.35

1.48

24.0

0.93

0.17

6.9

79

1

1

2

6

1

1

0

1B5 701 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.