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PDBsum entry 4hqb

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Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 4hqb calculated with MOLE 2.0 PDB id
4hqb
Pores calculated on whole structure Pores calculated excluding ligands

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23 pores, coloured by radius 23 pores, coloured by radius 23 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.11 1.11 26.4 -1.13 -0.65 11.5 85 2 1 3 1 0 1 0  DT 1 M DT 2 M DT 3 M
2 1.73 1.89 27.6 -1.16 -0.68 11.9 87 2 1 2 1 0 1 0  DT 2 M DT 3 M DT 4 M
3 1.77 1.78 28.1 -1.60 -0.49 23.5 87 3 2 2 2 0 1 0  
4 2.74 2.74 32.5 0.18 0.20 11.9 71 3 0 1 4 2 1 0  DT 3 M DT 4 M
5 1.08 1.09 35.8 -0.82 -0.35 9.4 79 3 0 3 3 1 1 0  DT 1 M DT 2 M DT 3 M DT 4 M
6 1.74 1.75 39.6 -1.75 -0.60 15.5 75 4 3 2 2 2 1 0  DT 5 N DT 8 N DT 9 N
7 2.01 2.24 42.4 -1.94 -0.46 21.3 78 5 4 3 1 1 1 0  
8 1.73 1.90 44.1 -0.96 -0.49 11.5 85 3 1 3 4 1 1 0  DT 2 M DT 4 M
9 1.67 1.67 57.2 -1.98 -0.59 26.5 88 5 5 4 1 1 1 0  DT 8 N DT 9 N
10 1.77 1.80 59.9 -1.58 -0.54 19.5 86 6 4 4 4 0 3 0  DT 1 M DT 2 M
11 1.19 1.19 61.3 -1.16 -0.49 15.2 84 5 4 5 3 1 3 0  DT 1 M DT 2 M DT 3 M DT 8 N DT 9 N
12 1.09 1.12 62.1 -1.66 -0.58 17.9 83 6 3 5 3 0 4 0  DT 1 M DT 2 M DT 3 M
13 1.69 1.69 64.9 -1.03 -0.34 19.4 86 6 4 4 5 2 2 0  DT 4 M DT 8 N DT 9 N
14 1.78 1.77 65.8 -1.44 -0.41 20.7 86 7 3 4 5 1 3 0  DT 4 M
15 2.05 2.05 70.8 -2.32 -0.55 30.7 86 8 5 4 2 0 3 0  DT 1 M DT 2 M
16 1.77 1.81 72.2 -1.94 -0.43 26.9 82 9 5 5 4 1 3 0  DT 5 N
17 1.18 1.19 73.0 -2.41 -0.59 29.2 83 8 4 5 1 0 4 0  DT 1 M DT 2 M DT 3 M
18 1.59 1.59 74.3 -2.06 -0.56 28.0 85 8 6 5 2 1 2 0  DT 8 N DT 9 N
19 1.16 1.17 75.4 -1.99 -0.52 23.8 78 9 4 5 2 1 4 0  DT 1 M DT 2 M DT 3 M DT 5 N
20 2.19 2.28 76.6 -2.17 -0.43 31.4 85 9 4 4 3 1 4 0  DT 4 M
21 1.90 2.19 79.0 -1.83 -0.41 25.2 80 10 4 4 4 2 3 0  DT 4 M DT 5 N
22 1.37 1.37 84.0 -1.66 -0.52 20.7 79 8 5 4 2 1 5 0  DT 1 M DT 2 M DT 5 N DT 6 N DT 7 N
23 1.87 1.87 94.1 -1.26 -0.42 17.6 78 10 4 5 6 3 4 0  DT 3 M DT 4 M

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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