PDBsum entry 4h6t

Tunnel analysis for: 4h6t calculated with

MOLE 2.0

PDB id

4h6t

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

6 tunnels, coloured by tunnel radius

8 tunnels, coloured by tunnel radius

8 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.17

1.31

22.4

-0.67

-0.24

12.7

78

4

2

1

3

2

0

0

PO4 406 A

2

1.47

1.47

15.3

-0.73

-0.16

6.1

86

2

0

1

2

1

0

0

3

1.49

1.48

18.7

0.61

0.21

3.8

91

2

0

1

4

1

1

0

4

1.45

1.45

20.8

-1.37

-0.21

14.2

78

2

2

1

2

2

1

0

5

1.46

1.45

21.8

0.32

-0.01

3.2

93

2

0

1

7

2

1

0

6

1.28

1.28

17.6

-0.31

-0.01

13.4

61

1

3

2

1

4

2

1

7

1.42

1.42

17.9

-0.17

-0.33

6.4

58

0

1

0

4

1

0

0

8

1.42

1.43

30.6

0.01

0.13

1.8

65

0

0

2

4

3

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.