PDBsum entry 4gqb Go to PDB code:  Tunnel analysis for: 4gqb calculated with MOLE 2.0 PDB id 4gqb Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   11 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.39 1.54 33.8 -1.77 -0.62 12.0 83 3 5 5 3 0 4 0   2 1.39 1.55 36.6 -1.29 -0.47 13.8 81 3 4 3 2 1 3 0   3 1.38 1.49 39.0 -1.76 -0.50 18.6 81 4 3 5 3 0 6 0   4 1.40 1.51 51.8 -1.44 -0.41 16.3 82 5 5 7 5 0 4 1   5 1.39 1.53 77.6 -1.36 -0.53 15.6 83 7 8 7 6 1 5 2   6 1.31 1.34 19.0 -1.69 -0.26 18.0 67 4 1 1 1 3 1 1   7 1.23 1.23 15.4 -0.80 -0.35 14.8 79 3 0 1 2 2 0 0   8 1.39 2.32 15.7 -0.94 -0.50 15.8 89 2 2 2 1 1 0 0   9 1.23 3.34 16.0 -0.96 0.00 20.1 85 3 1 2 1 2 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.