PDBsum entry 4gpk Go to PDB code:  Pore analysis for: 4gpk calculated with MOLE 2.0 PDB id 4gpk Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   20 pores, coloured by radius 20 pores, coloured by radius 20 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.78 2.16 86.2 -2.23 -0.35 29.9 82 14 7 7 5 5 0 0   2 1.77 1.94 86.5 -1.95 -0.24 24.1 80 12 6 5 4 4 0 0   3 2.19 3.17 92.4 -2.54 -0.47 32.6 79 13 8 8 4 4 0 0   4 3.08 5.57 93.3 -2.91 -0.50 32.1 81 13 8 9 3 5 0 0   5 1.56 2.23 104.3 -1.95 -0.32 25.8 80 7 5 5 7 3 0 0   6 1.13 2.62 125.5 -0.90 0.07 23.2 75 11 10 4 14 5 0 0   7 1.19 2.49 170.1 -1.50 -0.03 24.8 73 15 14 7 15 8 0 0   8 1.15 2.25 206.2 -1.36 -0.15 24.5 76 20 13 9 23 9 0 0   9 1.31 1.30 232.1 -0.66 0.09 20.4 75 21 16 6 29 10 0 0   10 1.62 1.79 226.4 -1.30 -0.08 24.1 75 21 17 9 21 9 0 0   11 2.93 4.80 225.1 -1.62 -0.16 25.9 75 18 17 10 12 10 0 0   12 2.99 4.23 230.4 -1.90 -0.26 27.8 78 23 17 13 15 10 0 0   13 1.43 1.41 245.9 -1.53 -0.07 25.7 75 20 16 9 20 13 0 0   14 1.42 1.43 296.3 -1.70 -0.13 27.1 76 31 22 12 26 14 0 0   15 2.20 3.17 293.1 -1.79 -0.21 26.7 75 27 22 13 18 12 0 0   16 1.25 1.53 335.1 -1.74 -0.25 25.5 75 28 24 17 23 17 0 0   17 1.27 1.27 360.2 -1.51 -0.16 23.9 75 27 24 15 25 20 0 0   18 1.25 1.25 374.8 -1.51 -0.15 23.1 74 25 22 15 22 24 0 0   19 1.17 1.36 370.4 -1.25 -0.05 21.4 74 27 22 14 32 24 1 0   20 1.17 1.27 429.9 -1.70 -0.18 25.4 76 38 29 19 30 23 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.