spacer
spacer

PDBsum entry 4gn1

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 4gn1 calculated with MOLE 2.0 PDB id
4gn1
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
7 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.87 2.01 25.7 -0.25 -0.10 11.8 91 3 0 2 3 1 0 0  
2 2.23 2.60 27.8 -2.59 -0.71 27.3 83 4 5 3 2 0 0 0  
3 3.09 3.09 29.9 -1.91 -0.36 21.4 84 6 5 4 2 1 0 0  
4 4.00 4.43 30.5 -1.89 -0.53 17.0 90 3 5 5 2 1 0 0  
5 1.86 2.01 30.6 -1.76 -0.59 17.2 86 1 4 4 2 1 0 0  
6 1.88 2.02 48.0 -1.54 -0.37 18.6 85 5 6 3 5 1 0 0  
7 1.56 1.56 64.8 -2.27 -0.58 22.2 79 6 4 4 1 2 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer