 |
PDBsum entry 4gl2
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 4gl2 calculated with  MOLE 2.0
|
PDB id
|
|
|
|
4gl2
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
11 pores,
coloured by radius |
|
11 pores,
coloured by radius
|
11 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.26 |
1.65 |
57.6 |
0.03 |
0.12 |
9.4 |
78 |
|
1 |
3 |
5 |
9 |
3 |
1 |
0 |
|
|
 |
|
2 |
 |
1.40 |
4.17 |
74.6 |
-1.07 |
-0.26 |
21.8 |
84 |
8 |
3 |
3 |
10 |
0 |
0 |
0 |
A 1 E U 2 E C 6 E G 7 E G 8 E A 1 F G 3 F C 5 F
|
|
3 |
 |
1.35 |
4.25 |
85.2 |
-1.09 |
-0.40 |
19.0 |
85 |
8 |
5 |
3 |
10 |
1 |
0 |
0 |
A 1 E U 2 E U 12 E G 4 F
|
|
4 |
 |
1.98 |
2.29 |
106.6 |
-1.52 |
-0.45 |
18.3 |
83 |
11 |
5 |
8 |
5 |
2 |
3 |
0 |
ANP 1101 B A 1 E U 2 E C 3 E C 4 E G 5 E C 6 E G
7 E G 8 E A 1 F C 5 F C 6 F G 7 F C 8 F G 9 F G
10 F U 12 F
|
|
5 |
 |
2.05 |
2.29 |
107.6 |
-1.38 |
-0.31 |
20.4 |
83 |
10 |
6 |
6 |
8 |
2 |
3 |
0 |
ANP 1101 B A 1 E
|
|
6 |
 |
1.15 |
2.76 |
148.0 |
-1.92 |
-0.59 |
24.6 |
83 |
18 |
12 |
8 |
8 |
3 |
0 |
0 |
G 7 C G 8 C C 9 C A 1 D G 3 D G 4 D C 5 D A 1 E U
2 E U 12 E G 4 F
|
|
7 |
 |
1.27 |
2.77 |
158.2 |
-2.04 |
-0.50 |
25.6 |
81 |
21 |
11 |
10 |
7 |
3 |
4 |
0 |
ANP 1101 B C 6 C G 7 C G 8 C C 9 C A 1 D G 3 D G
4 D C 5 D A 1 E U 12 F
|
|
8 |
 |
2.08 |
2.07 |
174.7 |
-1.85 |
-0.45 |
25.2 |
83 |
10 |
5 |
4 |
7 |
1 |
0 |
0 |
ANP 1101 A A 1 C A 11 D U 12 D A 1 E
|
|
9 |
 |
2.06 |
2.06 |
178.2 |
-2.01 |
-0.61 |
22.4 |
83 |
11 |
5 |
6 |
4 |
1 |
0 |
0 |
ANP 1101 A A 1 C A 11 D U 12 D A 1 E U 2 E C 3 E
C 4 E G 5 E C 6 E G 7 E G 8 E A 1 F C 5 F C 6 F G
7 F C 8 F G 9 F G 10 F U 12 F
|
|
10 |
 |
1.21 |
1.75 |
183.8 |
-1.76 |
-0.53 |
21.4 |
83 |
21 |
9 |
11 |
10 |
1 |
1 |
0 |
C 6 C G 7 C G 8 C C 9 C A 1 D G 3 D G 4 D C 5 D A
1 E U 2 E C 3 E C 4 E G 5 E C 6 E G 7 E G 8 E C 9
E C 10 E C 11 E A 1 F G 2 F G 3 F C 5 F C 6 F G 7
F C 8 F G 9 F G 10 F U 12 F
|
 |
11 |
 |
2.05 |
3.88 |
194.8 |
-1.71 |
-0.26 |
27.8 |
81 |
17 |
7 |
3 |
8 |
1 |
2 |
0 |
ANP 1101 A ANP 1101 B A 1 C A 11 D U 12 D
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program