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PDBsum entry 4ggq

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Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 4ggq calculated with MOLE 2.0 PDB id
4ggq
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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21 tunnels, coloured by tunnel radius 22 tunnels, coloured by tunnel radius 22 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.95 14.9 -0.65 -0.23 20.8 82 4 2 0 3 1 0 0  
2 1.76 16.8 -0.96 -0.18 24.5 79 4 2 0 3 1 0 0  
3 1.96 17.0 -1.09 -0.15 23.7 78 3 2 2 3 1 0 0  
4 1.83 18.5 -1.34 -0.28 25.0 81 4 2 2 3 1 0 0  
5 1.84 21.6 -1.37 -0.55 16.3 85 3 2 3 2 1 0 0  
6 1.88 24.1 -1.28 -0.25 22.9 74 4 3 1 3 2 0 0  
7 1.89 24.9 -0.68 -0.16 21.0 82 4 3 3 5 1 0 0  
8 1.27 13.8 1.51 0.54 5.3 70 2 0 0 4 1 1 0  
9 1.92 12.5 -2.47 -0.33 24.7 67 2 2 1 1 1 0 0  
10 1.93 14.0 -2.35 -0.45 34.4 80 4 2 1 2 0 0 0  
11 1.92 16.8 -2.08 -0.34 16.3 70 3 1 2 1 1 0 0  
12 2.65 16.6 -1.96 -0.33 25.3 77 4 2 2 3 1 0 0  
13 2.64 16.7 -2.60 -0.45 31.9 75 3 3 1 2 1 0 0  
14 2.43 17.0 -2.36 -0.28 23.7 76 3 3 1 0 1 0 0  
15 2.15 7.6 -2.15 -0.73 4.7 85 0 1 3 0 0 1 0  
16 1.60 11.6 -2.22 -0.72 11.9 86 2 1 4 0 0 1 0  
17 1.30 7.0 0.89 1.33 1.1 60 0 0 0 3 5 0 0  201 861 B
18 1.99 5.9 1.35 0.71 4.2 79 0 1 0 4 1 0 0  
19 2.07 4.2 -0.83 -0.64 13.2 83 1 1 0 1 0 0 0  
20 1.74 6.9 -1.31 -0.70 19.6 82 1 2 0 1 0 0 0  
21 1.28 7.2 0.91 0.42 8.4 76 2 0 0 3 0 1 0  
22 1.26 6.9 0.94 0.18 2.2 72 0 0 0 1 2 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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