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PDBsum entry 4gg8

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Pore analysis for: 4gg8 calculated with MOLE 2.0 PDB id
4gg8
Pores calculated on whole structure Pores calculated excluding ligands

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22 pores, coloured by radius 22 pores, coloured by radius 22 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.99 3.99 27.0 -0.05 -0.21 7.5 73 1 3 1 3 0 2 0  
2 3.66 4.05 28.0 -0.98 -0.48 12.2 76 3 2 3 1 1 1 0  
3 4.07 4.67 34.1 -0.51 -0.42 14.1 84 1 3 2 4 0 0 0  
4 2.82 2.82 39.4 -1.04 -0.45 10.3 76 3 0 3 2 1 2 0  
5 3.35 4.20 40.9 -0.70 -0.31 10.7 74 4 3 3 4 1 3 1  
6 3.67 4.04 41.1 -0.60 -0.46 11.4 87 3 1 3 4 0 0 0  
7 3.90 4.08 41.8 -1.95 -0.53 20.5 94 4 4 12 2 0 0 0  
8 3.65 4.04 42.0 -0.59 -0.35 9.8 77 3 1 3 3 0 2 0  
9 3.37 4.21 44.8 -1.09 -0.34 14.4 75 4 3 3 5 0 2 1  
10 3.93 3.95 47.2 -1.63 -0.43 19.5 86 4 6 9 3 1 1 0  
11 3.91 4.08 47.5 -1.87 -0.45 22.0 88 4 6 9 3 0 0 0  
12 3.35 3.55 47.7 -1.28 -0.42 15.2 86 4 4 8 4 0 2 1  
13 4.11 4.68 51.2 -1.53 -0.33 20.5 81 4 8 6 4 1 1 0  
14 3.36 4.22 51.7 -0.32 -0.23 8.4 75 4 1 2 5 0 4 1  
15 3.33 3.55 52.9 -1.21 -0.42 13.5 84 4 4 8 5 0 2 1  
16 3.35 3.55 53.8 -1.12 -0.33 15.3 81 4 6 6 5 0 2 1  
17 2.94 2.94 54.2 -1.33 -0.45 15.2 89 2 4 8 5 0 2 0  
18 3.34 3.55 56.8 -0.94 -0.30 13.4 78 4 6 6 6 1 3 1  
19 3.32 3.55 59.4 -0.66 -0.30 9.5 78 4 4 6 7 0 4 2  
20 2.95 2.94 61.6 -0.71 -0.35 8.8 80 2 4 5 8 0 4 1  
21 2.95 2.94 65.2 -0.82 -0.33 11.0 79 3 4 3 6 0 4 1  
22 2.01 3.41 119.0 -1.55 -0.55 15.8 83 8 5 8 5 1 2 1  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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