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PDBsum entry 4g0d
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Pore analysis for: 4g0d calculated with  MOLE 2.0
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PDB id
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4g0d
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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13 pores,
coloured by radius |
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18 pores,
coloured by radius
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18 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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2.38 |
3.06 |
27.6 |
-2.15 |
-0.29 |
22.6 |
74 |
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4 |
3 |
1 |
1 |
1 |
3 |
1 |
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PGO 517 D
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2 |
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2.27 |
2.28 |
30.7 |
-1.90 |
-0.53 |
20.4 |
81 |
6 |
2 |
4 |
1 |
1 |
3 |
0 |
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3 |
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1.60 |
2.36 |
34.1 |
-1.62 |
-0.02 |
19.2 |
73 |
5 |
4 |
3 |
1 |
4 |
0 |
2 |
PGO 516 A
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4 |
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2.34 |
3.11 |
39.3 |
-2.09 |
-0.20 |
21.2 |
73 |
3 |
3 |
2 |
1 |
3 |
3 |
0 |
PGO 514 C PGO 515 C PGO 517 D
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5 |
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1.29 |
1.29 |
47.1 |
-1.83 |
-0.15 |
28.1 |
73 |
7 |
5 |
2 |
2 |
2 |
2 |
2 |
GOL 512 B
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6 |
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1.61 |
2.39 |
47.4 |
-1.52 |
-0.20 |
16.1 |
75 |
6 |
5 |
4 |
1 |
3 |
3 |
2 |
PGO 516 A
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7 |
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1.39 |
1.39 |
53.2 |
-2.17 |
-0.21 |
31.1 |
75 |
8 |
7 |
1 |
0 |
2 |
1 |
2 |
PEG 520 A GOL 512 B
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8 |
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1.43 |
1.43 |
58.2 |
-1.10 |
-0.28 |
16.5 |
76 |
5 |
4 |
2 |
2 |
4 |
3 |
0 |
GOL 512 B
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9 |
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2.35 |
2.52 |
58.8 |
-2.05 |
-0.26 |
27.4 |
72 |
7 |
4 |
2 |
0 |
2 |
2 |
2 |
GOL 512 C PGO 514 C PGO 515 C
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10 |
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1.28 |
1.60 |
67.0 |
-1.63 |
-0.30 |
18.0 |
72 |
5 |
6 |
3 |
1 |
2 |
5 |
4 |
PGO 517 D
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11 |
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1.63 |
1.91 |
70.0 |
-1.57 |
-0.18 |
15.9 |
74 |
8 |
4 |
6 |
5 |
8 |
2 |
0 |
PGO 516 A PGO 519 B
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12 |
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1.28 |
1.60 |
75.1 |
-1.36 |
-0.24 |
14.3 |
72 |
5 |
4 |
5 |
0 |
3 |
6 |
4 |
PGO 514 C PGO 515 C PGO 517 D
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13 |
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1.52 |
3.11 |
79.0 |
-1.47 |
-0.27 |
19.6 |
74 |
9 |
6 |
3 |
3 |
5 |
4 |
2 |
PEG 520 A GOL 512 B
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14 |
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1.74 |
2.07 |
83.4 |
-1.50 |
-0.24 |
14.8 |
75 |
8 |
5 |
7 |
5 |
7 |
5 |
0 |
PGO 516 A PGO 519 B
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15 |
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1.66 |
1.83 |
94.9 |
-1.92 |
-0.32 |
22.6 |
75 |
8 |
5 |
5 |
1 |
3 |
7 |
2 |
PGO 514 C PGO 515 C PGO 521 C PGO 517 D
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16 |
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1.35 |
2.02 |
100.3 |
-1.65 |
-0.36 |
17.1 |
74 |
8 |
6 |
5 |
0 |
5 |
8 |
2 |
PGO 514 C PGO 515 C PGO 521 C PGO 517 D
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17 |
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2.38 |
2.53 |
117.1 |
-1.65 |
-0.27 |
19.1 |
75 |
10 |
6 |
8 |
1 |
4 |
8 |
3 |
PGO 514 C PGO 515 C PGO 521 C PGO 517 D PGO 518 D
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18 |
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2.40 |
2.40 |
49.9 |
-1.49 |
-0.32 |
20.7 |
86 |
1 |
5 |
3 |
4 |
2 |
1 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program