PDBsum entry 4fny

Tunnel analysis for: 4fny calculated with

MOLE 2.0

PDB id

4fny

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

3 tunnels, coloured by tunnel radius

7 tunnels, coloured by tunnel radius

7 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.42

1.42

22.3

0.14

0.20

23.7

79

1

6

0

5

1

0

1

I3K 1501 A

2

1.41

1.41

24.9

0.72

0.18

11.7

77

3

3

0

6

2

1

1

I3K 1501 A

3

1.41

1.41

26.8

1.33

0.35

10.6

77

1

6

1

9

1

1

1

I3K 1501 A

4

1.26

1.42

27.0

0.84

0.15

8.1

81

3

3

2

9

2

1

2

I3K 1501 A

5

1.13

1.44

24.3

-1.06

-0.33

15.7

69

4

1

2

3

2

4

1

6

1.53

1.76

15.5

-0.52

-0.43

16.3

82

3

3

2

2

1

0

2

7

1.22

1.48

17.8

1.45

0.53

10.4

72

4

1

0

6

1

2

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.