PDBsum entry 4fm5

Pore analysis for: 4fm5 calculated with

MOLE 2.0

PDB id

4fm5

Pores calculated on whole structure

Pores calculated excluding ligands

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9 pores, coloured by radius

17 pores, coloured by radius

17 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.64

2.64

31.7

-1.05

-0.01

12.4

76

4

0

5

2

3

1

0

2

1.22

1.30

36.8

-1.04

-0.40

11.7

75

3

3

4

2

2

2

1

3

1.57

1.57

42.0

-1.99

-0.60

6.7

73

4

0

5

1

2

2

0

4

1.15

1.28

43.6

-1.05

-0.40

11.2

73

4

4

4

3

2

3

1

5

1.16

1.40

45.9

-1.50

-0.44

15.8

78

5

1

4

4

2

2

0

6

2.63

2.64

48.6

-2.55

-0.74

27.6

76

2

5

3

0

2

0

0

7

1.58

1.58

51.6

-1.93

-0.52

11.5

72

4

2

5

2

3

2

0

8

1.40

3.10

52.2

-1.52

-0.15

19.3

81

6

2

5

4

4

0

0

BOG 702 A

9

1.42

2.73

57.0

-1.57

-0.34

20.4

85

7

4

6

4

2

0

0

BOG 701 B

10

1.14

1.15

64.7

-1.98

-0.51

22.8

78

4

7

7

2

4

0

0

NAG 1 H

11

1.11

1.41

67.5

-1.08

-0.23

12.9

79

7

2

7

4

5

1

0

12

1.75

1.75

67.8

-1.35

-0.32

12.6

75

6

4

9

4

4

1

2

13

1.22

1.42

72.5

-1.30

-0.22

16.2

77

7

3

5

5

3

2

0

NAG 1 H

14

1.44

1.88

79.1

0.53

0.08

4.9

79

3

1

6

11

8

1

0

DF0 706 A NAG 1 F

15

1.42

2.01

88.2

-0.56

-0.15

11.2

81

7

3

11

11

8

1

0

DF0 705 B

16

1.42

1.44

89.0

-1.28

-0.35

14.7

74

5

6

10

8

4

2

2

NAG 1 G

17

1.69

1.96

135.9

-2.35

-0.44

25.8

79

9

6

6

2

3

3

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.