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Ligand clusters for UniProt code Q5SJ79

Ligand clusters for Q5SJ79: Cytochrome c oxidase subunit 1 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=cbaA PE=1 SV=1

Top 6 (of 9) ligand clusters
Cluster 1.
9 ligand types
68 ligands
Cluster 2.
3 ligand types
17 ligands
Cluster 3.
3 ligand types
113 ligands
Cluster 4.
2 ligand types
15 ligands
Cluster 5.
1 ligand type
34 ligands
Cluster 6.
1 ligand type
26 ligands
Representative protein: 2qpdA  
 

Structures

PDB   Schematic diagram
2qpdA    
3s3aA    
3s3bA    
1ehkA    
4gp8A    
 more ...

 

 Cluster 1 contains 9 ligand types

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Ligand Description


 
1. Ligand: HAS × 1
Heme-As
PDB code: 1ehk(A).

_Cu
 
2. Metal: _CU × 22
PDB codes: 1ehk(A), 3bvd(A), 3s33(A), 3s38(A), 3s39(A), 3s3a(A), 3s3b(A), 3s3c(A), 3s3d(A), 3s8f(A), 3s8g(A), 4fa7(A), 4faa(A), 4g70(A), 4g72(A), 4g7q(A), 4g7r(A), 4g7s(A), 4gp4(A), 4gp5(A), 4gp8(A), 4n4y(A).


 
3. Ligand: HAS × 18
Heme-As
PDB codes: 2qpd(A), 2qpe(A), 3bvd(A), 3eh3(A), 3eh4(A), 3eh5(A), 3qjq(A), 3qjr(A), 3qjt(A), 3qju(A), 3qjv(A), 3s33(A), 3s38(A), 3s39(A), 3s3a(A), 3s3b(A), 3s3c(A), 3s3d(A).

Cu1
 
4. Metal: CU1 × 11
PDB codes: 2qpd(A), 2qpe(A), 3eh3(A), 3eh4(A), 3eh5(A), 3qjq(A), 3qjr(A), 3qjs(A), 3qjt(A), 3qju(A), 3qjv(A).


 
5. Ligand: HAS-PER × 9
HAS=Heme-As, PER=Peroxide ion.
PDB codes: 3s8f(A), 4g71(A), 4g72(A), 4g7q(A), 4g7r(A), 4g7s(A), 4gp4(A), 4gp5(A), 4gp8(A).


 
6. Ligand: HAS-PEO × 3
HAS=Heme-As, PEO=Hydrogen peroxide.
PDB codes: 4fa7(A), 4faa(A), 4n4y(A).


 
7. Ligand: HAS-_CU × 2
PDB codes: 3s8g(A), 4g70(A).

Cub
 
8. Metal: CUB × 1
PDB code: 4g71(A).


 
9. Ligand: HAS-CMO × 1
HAS=Heme-As, CMO=Carbon monoxide.
PDB code: 3qjs(A).

 

 Cluster 2 contains 3 ligand types

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Ligand Description


 
1. Ligand: BNG × 1
B-Nonylglucoside
PDB code: 1ehk(A).


 
2. Ligand: OLC × 15
(2r)-2,3-Dihydroxypropyl (9z)-Octadec-9-Enoate
PDB codes: 3s8f(A), 3s8g(A), 4fa7(A), 4faa(A), 4g70(A), 4g71(A), 4g72(A), 4g7q(A), 4g7r(A), 4g7s(A), 4gp4(A), 4gp5(A), 4gp8(A), 4n4y(A).


 
3. Ligand: BNG × 1
B-Nonylglucoside
PDB code: 3eh5(A).

 

 Cluster 3 contains 3 ligand types

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Ligand Description


 
1. Ligand: BNG × 1
B-Nonylglucoside
PDB code: 1ehk(A).


 
2. Ligand: OLC × 108
(2r)-2,3-Dihydroxypropyl (9z)-Octadec-9-Enoate
PDB codes: 3s8f(A), 3s8g(A), 4fa7(A), 4faa(A), 4g70(A), 4g71(A), 4g72(A), 4g7q(A), 4g7r(A), 4g7s(A), 4gp4(A), 4gp5(A), 4gp8(A), 4n4y(A),


 
3. Ligand: BNG × 4
B-Nonylglucoside
PDB codes: 3eh4(A), 3eh5(A),

 

 Cluster 4 contains 2 ligand types

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Ligand Description


 
1. Ligand: BNG × 1
B-Nonylglucoside
PDB code: 1ehk(A).


 
2. Ligand: OLC × 14
(2r)-2,3-Dihydroxypropyl (9z)-Octadec-9-Enoate
PDB codes: 3s8f(A), 3s8g(A), 4fa7(A), 4faa(A), 4g70(A), 4g71(A), 4g72(A), 4g7q(A), 4g7r(A), 4g7s(A), 4gp4(A), 4gp5(A), 4gp8(A), 4n4y(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: HEM × 34
Protoporphyrin IX containing fe
PDB codes: 1ehk(A), 2qpd(A), 2qpe(A), 3bvd(A), 3eh3(A), 3eh4(A), 3eh5(A), 3qjq(A), 3qjr(A), 3qjs(A), 3qjt(A), 3qju(A), 3qjv(A), 3s33(A), 3s38(A), 3s39(A), 3s3a(A), 3s3b(A), 3s3c(A), 3s3d(A), 3s8f(A), 3s8g(A), 4fa7(A), 4faa(A), 4g70(A), 4g71(A), 4g72(A), 4g7q(A), 4g7r(A), 4g7s(A), 4gp4(A), 4gp5(A), 4gp8(A), 4n4y(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: OLC × 26
(2r)-2,3-Dihydroxypropyl (9z)-Octadec-9-Enoate
PDB codes: 3s8f(A), 3s8g(A), 4fa7(A), 4faa(A), 4g70(A), 4g71(A), 4g72(A), 4g7q(A), 4g7r(A), 4g7s(A), 4gp4(A), 4gp5(A), 4gp8(A), 4n4y(A),

 

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