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Ligand clusters for UniProt code P82543

Ligand clusters for P82543: Cytochrome c oxidase polypeptide 2A OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=cbaD PE=1 SV=2

4 ligand clusters
Cluster 1.
4 ligand types
25 ligands
Cluster 2.
3 ligand types
45 ligands
Cluster 3.
1 ligand type
15 ligands
Cluster 4.
1 ligand type
13 ligands
Representative protein: 1ehkC  
 

Structures

PDB   Schematic diagram
1ehkC    
4n4yC    
3qjuC    
3s8gC    
4g7rC    
 more ...

 

 Cluster 1 contains 4 ligand types

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Ligand Description


 
1. Ligand: HAS × 16
Heme-As
PDB codes: 1ehk(C), 1xme(C), 2qpd(C), 3bvd(C), 3eh3(C), 3eh4(C), 3qjq(C), 3qjr(C), 3qju(C), 3qjv(C), 3s38(C), 3s39(C), 3s3a(C), 3s3b(C), 3s3c(C), 3s3d(C).


 
2. Ligand: HAS-PER × 6
HAS=Heme-As, PER=Peroxide ion.
PDB codes: 3s8f(C), 4g71(C), 4g72(C), 4g7s(C), 4gp5(C), 4gp8(C).


 
3. Ligand: HAS-_CU × 2
PDB codes: 3s8g(C), 4g70(C).


 
4. Ligand: HAS-PEO × 1
HAS=Heme-As, PEO=Hydrogen peroxide.
PDB code: 4faa(C).

 

 Cluster 2 contains 3 ligand types

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Ligand Description


 
1. Ligand: BNG × 1
B-Nonylglucoside
PDB code: 1ehk(C).


 
2. Ligand: OLC × 42
(2r)-2,3-Dihydroxypropyl (9z)-Octadec-9-Enoate
PDB codes: 3s8f(C), 3s8g(C), 4fa7(C), 4faa(C), 4g70(C), 4g71(C), 4g72(C), 4g7q(C), 4g7r(C), 4g7s(C), 4gp4(C), 4gp5(C), 4gp8(C), 4n4y(C),


 
3. Ligand: BNG × 2
B-Nonylglucoside
PDB codes: 3eh4(C), 3eh5(C).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: OLC × 15
(2r)-2,3-Dihydroxypropyl (9z)-Octadec-9-Enoate
PDB codes: 3s8f(C), 3s8g(C), 4fa7(C), 4faa(C), 4g70(C), 4g71(C), 4g72(C), 4g7q(C), 4g7r(C), 4g7s(C), 4gp4(C), 4gp5(C), 4gp8(C), 4n4y(C).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: OLC × 13
(2r)-2,3-Dihydroxypropyl (9z)-Octadec-9-Enoate
PDB codes: 3s8f(C), 3s8g(C), 4fa7(C), 4faa(C), 4g70(C), 4g71(C), 4g72(C), 4g7q(C), 4g7r(C), 4g7s(C), 4gp4(C), 4gp8(C), 4n4y(C).

 

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