 |
PDBsum entry 4f52
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 4f52 calculated with MOLE 2.0
|
PDB id
|
|
|
|
4f52
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
13 pores,
coloured by radius |
 |
13 pores,
coloured by radius
|
13 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.72 |
2.60 |
54.9 |
-0.18 |
0.04 |
16.2 |
77 |
 |
6 |
4 |
2 |
9 |
3 |
0 |
0 |
 |
|
 |
 |
2 |
 |
1.79 |
1.79 |
64.5 |
-1.19 |
-0.35 |
15.4 |
72 |
4 |
5 |
3 |
0 |
5 |
2 |
1 |
|
 |
3 |
 |
1.28 |
1.73 |
77.3 |
-0.15 |
0.03 |
12.5 |
77 |
7 |
2 |
7 |
13 |
4 |
1 |
1 |
|
 |
4 |
 |
1.26 |
2.08 |
85.5 |
-0.02 |
0.09 |
14.1 |
77 |
2 |
8 |
7 |
12 |
3 |
1 |
0 |
|
 |
5 |
 |
2.11 |
2.29 |
87.5 |
-2.02 |
-0.51 |
19.0 |
82 |
6 |
7 |
11 |
3 |
3 |
1 |
0 |
|
 |
6 |
 |
1.32 |
1.27 |
121.8 |
-0.55 |
-0.08 |
17.3 |
78 |
7 |
8 |
7 |
11 |
1 |
0 |
0 |
|
 |
7 |
 |
1.79 |
1.79 |
138.0 |
-1.15 |
-0.27 |
15.8 |
80 |
6 |
3 |
7 |
6 |
5 |
2 |
0 |
|
 |
8 |
 |
1.19 |
1.52 |
25.8 |
0.33 |
0.08 |
8.9 |
82 |
2 |
2 |
2 |
5 |
2 |
0 |
0 |
|
 |
9 |
 |
1.19 |
3.41 |
26.4 |
1.95 |
0.67 |
5.5 |
72 |
1 |
0 |
0 |
9 |
3 |
0 |
0 |
|
 |
10 |
 |
2.66 |
3.57 |
27.8 |
-1.07 |
-0.43 |
14.5 |
79 |
3 |
2 |
4 |
2 |
2 |
1 |
0 |
|
 |
11 |
 |
1.42 |
2.28 |
40.9 |
-1.01 |
-0.46 |
7.7 |
83 |
1 |
3 |
6 |
5 |
3 |
1 |
0 |
|
 |
12 |
 |
1.18 |
1.31 |
97.2 |
-0.33 |
0.16 |
12.5 |
78 |
6 |
2 |
8 |
13 |
5 |
0 |
1 |
|
 |
13 |
 |
1.57 |
5.39 |
165.2 |
-1.23 |
-0.23 |
20.4 |
72 |
6 |
7 |
6 |
9 |
3 |
1 |
3 |
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |