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PDBsum entry 4f4x

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Top Page protein dna_rna ligands metals tunnels links
Tunnel analysis for: 4f4x calculated with MOLE 2.0 PDB id
4f4x
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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6 tunnels, coloured by tunnel radius 2 tunnels, coloured by tunnel radius 2 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.76 2.33 21.4 1.79 0.67 9.9 88 2 0 0 5 0 0 0  DG 11 P DG 12 P DC 4 T DC 6 T DC 7 T DC 8 T
2 1.59 1.59 33.0 -1.65 -0.11 30.1 94 4 0 2 2 0 0 0  DC 5 P DT 6 P DA 8 P DT 9 P DC 10 P DC 8 T DA 11
T DT 12 T

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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