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PDBsum entry 4f1h

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Top Page protein dna_rna ligands metals Protein-protein interface(s) pores links
Pore analysis for: 4f1h calculated with MOLE 2.0 PDB id
4f1h
Pores calculated on whole structure Pores calculated excluding ligands

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2 pores, coloured by radius 4 pores, coloured by radius 4 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.67 1.75 36.4 -1.38 -0.47 17.2 74 7 2 2 2 1 2 1  DG 5 C
2 2.04 2.29 40.2 -1.11 -0.25 16.0 72 5 1 2 3 1 2 2  DG 5 C
3 1.31 1.85 103.5 -0.70 -0.23 6.3 86 2 0 6 5 3 1 0  DT 1 C DG 2 C
4 1.53 1.95 141.9 -1.53 -0.47 10.1 86 4 1 7 3 2 1 0  DT 1 C DG 2 C DA 4 C DG 5 C

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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