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PDBsum entry 4f0k

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Lyase PDB id
4f0k
Jmol
Contents
Protein chains
448 a.a.
138 a.a.
Ligands
CO2
GOL ×3
Metals
_MG
_CL
Waters ×405

References listed in PDB file
Key reference
Title Structural mechanism of rubisco activation by carbamylation of the active site lysine.
Author B.Stec.
Ref. Proc Natl Acad Sci U S A, 2012, 109, 18785-18790.
PubMed id 23112176
Abstract
Ribulose 1,5-bisphosphate carboxylase/oxygenase (RuBisCO) is a crucial enzyme in carbon fixation and the most abundant protein on earth. It has been studied extensively by biochemical and structural methods; however, the most essential activation step has not yet been described. Here, we describe the mechanistic details of Lys carbamylation that leads to RuBisCO activation by atmospheric CO(2). We report two crystal structures of nitrosylated RuBisCO from the red algae Galdieria sulphuraria with O(2) and CO(2) bound at the active site. G. sulphuraria RuBisCO is inhibited by cysteine nitrosylation that results in trapping of these gaseous ligands. The structure with CO(2) defines an elusive, preactivation complex that contains a metal cation Mg(2+) surrounded by three H(2)O/OH molecules. Both structures suggest the mechanism for discriminating gaseous ligands by their quadrupole electric moments. We describe conformational changes that allow for intermittent binding of the metal ion required for activation. On the basis of these structures we propose the individual steps of the activation mechanism. Knowledge of all these elements is indispensable for engineering RuBisCO into a more efficient enzyme for crop enhancement or as a remedy to global warming.
PROCHECK
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 Headers