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PDBsum entry 4ect

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Top Page protein dna_rna ligands metals pores links
Pore analysis for: 4ect calculated with MOLE 2.0 PDB id
4ect
Pores calculated on whole structure Pores calculated excluding ligands

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5 pores, coloured by radius 5 pores, coloured by radius 5 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.68 1.69 56.0 -0.29 -0.12 14.3 75 5 0 1 3 1 0 1  DG 4 P DT 5 P DC 6 P DA 7 P DT 8 P DT 3 T DG 7 T
DC 9 T
2 1.36 1.46 58.5 -1.44 -0.50 19.2 80 6 4 2 3 1 1 0  DA 7 P DT 8 P DT 6 T DG 7 T
3 1.30 1.32 58.3 -0.73 -0.21 9.8 65 3 0 1 2 2 0 0  DC 6 P DA 7 P DT 8 P DA 2 T DT 3 T DT 4 T
4 1.35 1.35 65.8 -0.50 0.06 12.5 79 5 0 3 3 3 0 1  DG 4 P DT 5 P DA 2 T DT 3 T DT 4 T DT 6 T DG 7 T
DC 9 T
5 1.38 1.45 104.9 -1.15 -0.45 15.6 84 9 3 5 4 1 1 1  DG 4 P DT 5 P DC 6 P DA 7 P DT 8 P DT 6 T DG 7 T
DA 8 T DC 9 T DG 10 T DC 11 T DT 12 T

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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