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PDBsum entry 4ebw

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protein ligands links
Transferase/transferase inhibitor PDB id
4ebw

 

 

 

 

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JSmol PyMol  
Contents
Protein chain
259 a.a.
Ligands
0PF
Waters ×48
PDB id:
4ebw
Name: Transferase/transferase inhibitor
Title: Structure of focal adhesion kinase catalytic domain in complex with novel allosteric inhibitor
Structure: Focal adhesion kinase 1. Chain: a. Fragment: unp residues 411-686. Synonym: fadk 1, focal adhesion kinase-related nonkinase, frnk, protein phosphatase 1 regulatory subunit 71, ppp1r71, protein- tyrosine kinase 2, p125fak, pp125fak. Engineered: yes
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: ptk2, fak, fak1. Expressed in: spodoptera frugiperda. Expression_system_taxid: 7108
Resolution:
2.65Å     R-factor:   0.186     R-free:   0.273
Authors: M.Iwatani,H.Iwata,A.Okabe,R.J.Skene,N.Tomita,Y.Hayashi,Y.Aramaki, D.J.Hosfield,A.Hori,A.Baba,H.Miki
Key ref: M.Iwatani et al. (2013). Discovery and characterization of novel allosteric FAK inhibitors. Eur J Med Chem, 61, 49-60. PubMed id: 22819505 DOI: 10.1016/j.ejmech.2012.06.035
Date:
25-Mar-12     Release date:   25-Jul-12    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
Q05397  (FAK1_HUMAN) -  Focal adhesion kinase 1 from Homo sapiens
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
1052 a.a.
259 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 Enzyme reactions 
   Enzyme class: E.C.2.7.10.2  - non-specific protein-tyrosine kinase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H+
L-tyrosyl-[protein]
+ ATP
= O-phospho-L-tyrosyl-[protein]
+ ADP
+ H(+)
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

 
    Added reference    
 
 
DOI no: 10.1016/j.ejmech.2012.06.035 Eur J Med Chem 61:49-60 (2013)
PubMed id: 22819505  
 
 
Discovery and characterization of novel allosteric FAK inhibitors.
M.Iwatani, H.Iwata, A.Okabe, R.J.Skene, N.Tomita, Y.Hayashi, Y.Aramaki, D.J.Hosfield, A.Hori, A.Baba, H.Miki.
 
  ABSTRACT  
 
Focal adhesion kinase (FAK) regulates cell survival and proliferation pathways. Here we report the discovery of a highly selective series of 1,5-dihydropyrazolo[4,3-c][2,1]benzothiazines that demonstrate a novel mode of allosteric inhibition of FAK. These compounds showed slow dissociation from unphosphorylated FAK and were noncompetitive with ATP after long preincubation. Co-crystal structural analysis revealed that the compounds target a novel allosteric site within the C-lobe of the kinase domain, which induces disruption of ATP pocket formation leading to the inhibition of kinase activity. The potency of allosteric inhibition was reduced by phosphorylation of FAK. Coupled SAR analysis revealed that N-substitution of the fused pyrazole is critical to achieve allosteric binding and high selectivity among kinases.
 

 

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