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PDBsum entry 4e54

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Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 4e54 calculated with MOLE 2.0 PDB id
4e54
Pores calculated on whole structure Pores calculated excluding ligands

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13 pores, coloured by radius 23 pores, coloured by radius 23 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.37 2.37 30.8 -0.45 -0.48 3.0 101 0 0 1 2 0 0 0  DG 6 F DT 7 F DA 8 F DT 9 F DG 10 F DT 12 F DG 10
G 3DR 11 G DC 12 G DA 13 G DC 23 G
2 1.38 1.44 32.8 -1.22 -0.41 16.0 81 4 2 2 3 0 1 1  
3 2.51 2.51 40.7 -1.88 -0.61 20.5 90 2 0 2 1 0 0 0  DG 6 F DT 7 F DA 8 F DT 9 F DG 10 F DT 12 F DG 10
G 3DR 11 G DC 12 G DA 13 G DT 14 G DC 15 G DA 16
G DT 17 G
4 1.40 1.59 52.0 -1.04 -0.23 18.8 85 6 1 7 4 1 1 0  
5 1.10 1.10 53.4 -1.89 -0.24 25.2 79 9 2 3 6 0 2 0  
6 1.32 1.57 55.7 -1.52 -0.51 23.6 82 5 5 4 6 0 1 0  
7 1.35 1.43 113.3 -1.97 -0.41 21.6 76 15 5 6 5 2 7 0  DG 10 F DT 12 F DC 9 G DG 10 G DC 12 G DA 13 G
8 1.63 1.72 116.4 -1.90 -0.38 21.8 76 15 5 6 6 2 7 1  DG 6 F DT 7 F DA 13 G DT 14 G DC 15 G DA 16 G DT
17 G
9 1.35 1.41 118.2 -1.68 -0.53 19.1 83 9 8 7 5 1 4 0  DG 10 F DT 12 F DC 9 G DG 10 G DC 12 G DA 13 G
10 1.52 1.64 121.4 -1.63 -0.50 19.4 82 9 8 7 6 1 4 1  DG 6 F DT 7 F DA 13 G DT 14 G DC 15 G DA 16 G DT
17 G
11 1.23 1.34 121.2 -1.45 -0.45 21.2 81 6 10 4 5 2 2 2  
12 1.32 1.44 129.5 -1.47 -0.36 17.4 78 12 7 6 6 4 8 0  DG 10 F DT 12 F DC 9 G DG 10 G DC 12 G DA 13 G
13 1.72 1.87 132.7 -1.42 -0.33 17.8 77 12 7 6 7 4 8 1  DG 6 F DT 7 F DA 13 G DT 14 G DC 15 G DA 16 G DT
17 G
14 1.04 1.20 130.5 -1.76 -0.46 24.4 79 10 8 5 7 2 1 2  
15 1.04 1.20 137.1 -1.39 -0.30 18.7 77 14 6 7 10 4 7 1  DG 6 F DT 7 F DA 13 G DT 14 G DC 23 G
16 1.25 1.82 141.0 -1.52 -0.48 19.1 80 10 15 10 7 4 3 1  
17 1.23 1.37 172.8 -0.93 -0.11 20.4 76 10 8 3 8 5 3 1  
18 1.25 1.33 182.2 -1.55 -0.32 19.6 77 16 7 6 9 6 8 2  DG 10 F DT 12 F DG 10 G DC 12 G DA 13 G
19 1.22 1.36 200.1 -1.57 -0.46 20.0 81 11 16 9 8 5 3 3  
20 2.17 2.66 204.1 -1.95 -0.56 22.8 87 13 18 15 9 2 2 0  
21 1.71 1.99 246.6 -2.11 -0.45 25.4 83 22 17 15 9 4 6 0  
22 1.83 1.96 233.2 -1.72 -0.42 21.8 82 18 17 11 8 6 4 1  
23 1.36 1.46 248.2 -1.81 -0.48 22.2 83 23 12 12 9 4 5 0  DG 10 F DT 12 F DC 9 G DG 10 G DC 12 G DA 13 G

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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