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PDBsum entry 4dx9

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Top Page protein ligands Protein-protein interface(s) links
Protein binding PDB id
4dx9
Contents
Protein chains
106 a.a.
110 a.a.
105 a.a.
127 a.a.
(+ 9 more) 11 a.a.
118 a.a.
127 a.a.
91 a.a.
113 a.a.
104 a.a.
(+ 1 more) 127 a.a.
63 a.a.
47 a.a.
129 a.a.
116 a.a.
102 a.a.
99 a.a.
102 a.a.
106 a.a.
120 a.a.
101 a.a.
101 a.a.
128 a.a.
49 a.a.
12 a.a.
93 a.a.
Ligands
SER-ALA-VAL
VAL-ASN-PRO-LYS ×2
SER-ALA-VAL-THR
LYS-SER-ALA-VAL-
THR-THR-VAL-VAL
VAL-VAL-ASN-PRO-
LYS
LYS-SER-ALA-VAL-
THR-THR-VAL-VAL-
ASN-PRO
×4
SER-ALA-VAL-THR-
THR-VAL-VAL-ASN
ASN-PRO
LYS-SER-ALA-VAL ×2
ALA-VAL-THR-THR-
VAL-VAL-ASN-PRO
THR-VAL-VAL-ASN-
PRO

References listed in PDB file
Key reference
Title Mechanism for krit1 release of icap1-Mediated suppression of integrin activation.
Authors W.Liu, K.M.Draheim, R.Zhang, D.A.Calderwood, T.J.Boggon.
Ref. Mol Cell, 2013, 49, 719-729. [DOI no: 10.1016/j.molcel.2012.12.005]
PubMed id 23317506
Abstract
KRIT1 (Krev/Rap1 Interaction Trapped-1) mutations are observed in ∼40% of autosomal-dominant cerebral cavernous malformations (CCMs), a disease occurring in up to 0.5% of the population. We show that KRIT1 functions as a switch for β1 integrin activation by antagonizing ICAP1 (Integrin Cytoplasmic Associated Protein-1)-mediated modulation of "inside-out" activation. We present cocrystal structures of KRIT1 with ICAP1 and ICAP1 with integrin β1 cytoplasmic tail to 2.54 and 3.0 Å resolution (the resolutions at which I/σI = 2 are 2.75 and 3.0 Å, respectively). We find that KRIT1 binds ICAP1 by a bidentate surface, that KRIT1 directly competes with integrin β1 to bind ICAP1, and that KRIT1 antagonizes ICAP1-modulated integrin activation using this site. We also find that KRIT1 contains an N-terminal Nudix domain, in a region previously designated as unstructured. We therefore provide insights to integrin regulation and CCM-associated KRIT1 function.
PROCHECK
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