PDBsum entry 4dur

Pore analysis for: 4dur calculated with

MOLE 2.0

PDB id

4dur

Pores calculated on whole structure

Pores calculated excluding ligands

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20 pores, coloured by radius

17 pores, coloured by radius

17 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.68

3.84

25.6

-1.78

-0.22

23.8

75

3

2

2

4

3

0

0

NAG 1 C

2

2.37

2.37

28.4

-1.61

-0.23

24.6

77

6

1

1

2

2

0

0

NAG 1 C GAL 2 C

3

2.75

4.27

29.4

-1.97

-0.23

26.4

79

5

2

2

2

3

0

0

NAG 1 C GAL 2 C

4

3.78

5.06

31.2

-1.48

-0.16

21.9

79

6

1

2

2

1

3

1

5

1.08

1.08

32.7

-0.99

-0.54

15.6

75

4

4

0

3

1

1

0

6

3.04

3.26

32.7

-1.30

-0.47

17.4

91

5

1

9

1

0

0

2

7

2.11

2.69

33.2

-1.78

-0.45

23.6

80

6

2

1

2

1

1

0

NAG 1 D

8

1.79

1.90

38.2

-1.12

-0.02

22.2

72

2

2

2

2

1

1

0

9

3.08

3.24

39.3

-1.85

-0.51

22.7

87

7

3

4

1

1

2

0

10

1.89

2.07

40.3

-2.36

-0.46

28.9

82

6

5

3

1

2

0

0

11

1.55

1.55

55.0

-1.56

-0.50

19.0

86

6

1

3

2

1

0

0

NAG 1 D

12

1.95

2.79

57.0

-2.33

-0.58

23.1

86

6

3

4

1

1

1

0

CL 802 A

13

3.09

3.34

57.7

-1.38

-0.35

22.1

84

10

5

8

3

1

2

3

14

1.81

2.03

69.4

-1.91

-0.71

21.1

85

4

4

3

1

0

1

0

15

3.83

5.31

109.1

-1.36

-0.37

19.4

83

8

5

6

3

1

3

2

16

1.95

2.16

123.7

-1.56

-0.41

20.9

80

9

6

7

1

2

3

2

17

1.22

1.22

138.4

-1.46

-0.36

21.1

77

10

6

4

2

3

2

2

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.