PDBsum entry 4doh

Pore analysis for: 4doh calculated with

MOLE 2.0

PDB id

4doh

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

7 pores, coloured by radius

11 pores, coloured by radius

11 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.04

1.04

25.8

-1.75

-0.20

20.4

76

2

2

1

2

3

1

0

2

2.32

2.88

32.1

-1.39

-0.35

13.4

83

3

0

3

1

1

2

0

NAG 301 D NAG 301 E

3

2.64

3.13

54.9

-2.25

-0.56

18.1

82

6

6

5

0

1

3

0

4

2.91

3.20

58.0

-1.31

-0.27

16.5

88

6

2

4

3

1

1

0

5

2.28

2.53

59.3

-1.01

-0.47

12.7

85

6

3

5

5

1

2

1

6

2.27

2.54

62.8

-0.99

-0.39

13.8

82

6

2

3

5

2

2

1

7

2.27

2.53

66.5

-1.16

-0.41

13.6

83

6

1

5

5

2

3

1

NAG 301 D NAG 301 E

8

2.35

2.84

79.2

-1.95

-0.66

14.7

89

3

2

10

1

1

4

0

NAG 301 D NAG 301 E

9

2.66

3.16

83.9

-1.51

-0.47

15.2

88

8

4

7

3

1

3

0

NAG 301 B NAG 302 R

10

2.38

2.58

106.3

-1.10

-0.39

15.1

84

8

4

6

7

2

4

1

NAG 301 B NAG 302 R

11

2.84

3.12

139.0

-1.68

-0.50

16.3

88

10

5

12

4

2

5

0

NAG 301 B NAG 302 R

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.