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PDBsum entry 4doc

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Top Page protein dna_rna ligands metals pores links
Pore analysis for: 4doc calculated with MOLE 2.0 PDB id
4doc
Pores calculated on whole structure Pores calculated excluding ligands

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4 pores, coloured by radius 4 pores, coloured by radius 4 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.39 2.59 31.0 -1.96 -0.32 22.3 86 3 4 1 1 1 0 0  G1C 410 A DG 9 P DOC 10 P DC 5 T DC 6 T DG 7 T DC
8 T
2 2.39 2.59 34.9 -1.98 -0.27 24.5 91 3 3 2 2 1 0 0  G1C 410 A DG 9 P DOC 10 P DC 5 T DC 6 T DG 7 T DC
8 T
3 1.67 1.67 78.2 -1.41 -0.49 13.9 86 4 3 5 2 1 1 0  G1C 410 A DG 7 P DC 8 P DG 9 P DOC 10 P DT 12 T
DC 13 T DA 14 T
4 1.72 1.69 83.2 -1.74 -0.42 19.4 89 5 4 6 3 1 1 0  G1C 410 A DG 7 P DC 8 P DG 9 P DOC 10 P DC 6 T DT
12 T DC 13 T DA 14 T

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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