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PDBsum entry 4dmu
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Pore analysis for: 4dmu calculated with  MOLE 2.0
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PDB id
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4dmu
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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12 pores,
coloured by radius |
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16 pores,
coloured by radius
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16 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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2.27 |
2.31 |
27.2 |
-1.79 |
-0.53 |
11.9 |
69 |
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3 |
1 |
2 |
0 |
0 |
5 |
0 |
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HYP 124 C HYP 124 E HYP 9 K HYP 109 K
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2 |
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2.75 |
2.86 |
32.5 |
-0.34 |
-0.36 |
8.2 |
83 |
5 |
2 |
7 |
8 |
1 |
5 |
0 |
SO4 301 C HYP 227 E
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3 |
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2.25 |
2.44 |
36.1 |
-1.16 |
-0.37 |
5.8 |
63 |
1 |
0 |
3 |
0 |
1 |
6 |
1 |
HYP 121 E HYP 124 E HYP 221 E HYP 203 I
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4 |
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1.48 |
1.48 |
36.8 |
-1.01 |
-0.69 |
8.9 |
86 |
5 |
2 |
4 |
4 |
0 |
3 |
0 |
HYP 127 A
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5 |
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2.53 |
4.22 |
38.7 |
-0.87 |
-0.20 |
8.8 |
82 |
3 |
1 |
6 |
6 |
2 |
2 |
0 |
HYP 15 C HYP 124 E HYP 127 E HYP 15 I
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6 |
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1.28 |
1.32 |
39.1 |
-1.04 |
-0.27 |
10.4 |
86 |
5 |
2 |
5 |
9 |
1 |
2 |
0 |
HYP 15 C HYP 227 E SO4 301 I
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7 |
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1.40 |
1.41 |
40.8 |
-1.06 |
-0.55 |
9.6 |
76 |
5 |
1 |
2 |
4 |
1 |
3 |
2 |
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8 |
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2.25 |
2.44 |
46.1 |
-0.99 |
-0.26 |
7.3 |
70 |
2 |
0 |
4 |
3 |
2 |
6 |
0 |
HYP 121 E HYP 124 E HYP 221 E HYP 203 I
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9 |
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3.30 |
4.78 |
50.7 |
-1.26 |
-0.29 |
11.4 |
78 |
6 |
2 |
7 |
6 |
1 |
11 |
0 |
HYP 124 C HYP 127 C HYP 227 C HYP 124 E SO4 1901
F SO4 301 K
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10 |
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2.57 |
3.62 |
52.4 |
-1.15 |
-0.32 |
9.2 |
80 |
4 |
2 |
6 |
7 |
1 |
6 |
0 |
HYP 209 C SO4 301 C HYP 124 E HYP 127 E HYP 15 I
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11 |
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2.36 |
2.39 |
70.2 |
-1.17 |
-0.42 |
3.2 |
73 |
2 |
3 |
8 |
3 |
2 |
7 |
0 |
HYP 121 E HYP 221 E HYP 6 I HYP 106 I HYP 109 I
HYP 203 I HYP 109 K HYP 115 K
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12 |
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2.69 |
2.75 |
79.1 |
-0.13 |
0.04 |
6.6 |
70 |
2 |
1 |
0 |
4 |
2 |
9 |
0 |
HYP 124 C HYP 215 C HYP 221 C HYP 224 C HYP 124 E
HYP 103 K HYP 206 K
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13 |
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2.27 |
2.26 |
88.3 |
-0.32 |
-0.09 |
5.2 |
75 |
2 |
3 |
5 |
4 |
2 |
8 |
0 |
HYP 121 C HYP 215 C HYP 221 C HYP 224 C HYP 115 I
HYP 6 K HYP 103 K HYP 106 K HYP 203 K
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14 |
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1.24 |
2.17 |
126.0 |
-1.26 |
-0.36 |
11.6 |
79 |
10 |
3 |
10 |
11 |
0 |
13 |
3 |
HYP 124 C HYP 127 C HYP 227 C HYP 124 E SO4 301 K
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15 |
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1.88 |
1.88 |
131.2 |
-0.32 |
-0.10 |
5.9 |
77 |
4 |
2 |
10 |
11 |
4 |
15 |
0 |
HYP 115 C HYP 215 C HYP 221 C HYP 224 C HYP 227 C
SO4 1901 F HYP 103 K HYP 206 K HYP 209 K SO4 301 K
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16 |
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1.33 |
1.33 |
143.6 |
-1.16 |
-0.37 |
14.6 |
82 |
10 |
3 |
5 |
7 |
1 |
5 |
2 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program