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PDBsum entry 4dm9

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Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 4dm9 calculated with MOLE 2.0 PDB id
4dm9
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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11 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.95 9.0 -1.53 -0.54 17.8 73 1 1 1 1 0 1 0  
2 1.25 9.3 0.03 -0.43 5.5 75 0 1 0 4 0 1 0  
3 1.96 9.8 -1.70 -0.55 20.8 75 1 2 1 1 0 1 0  
4 1.95 10.0 -1.42 -0.50 17.4 73 1 1 1 1 0 1 0  
5 1.98 10.8 -1.59 -0.53 19.0 75 1 2 1 1 0 1 0  
6 1.24 11.2 1.49 0.02 1.5 77 0 0 0 4 0 1 0  
7 1.73 15.0 -2.22 -0.71 25.9 81 2 2 2 1 0 0 0  
8 1.72 16.2 -1.79 -0.65 22.8 77 2 2 1 1 0 0 0  
9 1.33 15.2 2.05 0.74 1.1 67 0 0 1 7 2 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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